Query gene

ProbeIDFunctional annotationPsortPT_ACCGeneChip probesetsVitisnet molecular networkA.thaliana orthologue network
VIT_16s0100g00290L-idonate dehydrogenasePMCCB564781613165_s_at 1612918_at 1622252_atvv10051Fructose and mannose metabolismAT5G51970


ELMM recoveres tightly-associated hub genes

 
TargetAssociated genesCPPD_scoreFunctionLocalizationVitisnet molecular networkVV
VIT_08s0040g01770ELMMQuery2.7E-06Cyclic nucleotide-gated ion channel 15PMvv34626Plant-pathogen_interaction vv50101Channels_and_poresVV08s0040g01770
VIT_13s0067g01450ELMMQuery2.77E-06Lateral organ boundaries domain 21C C/M N Mvv60007AS2VV13s0067g01450
VIT_04s0008g05480ELMMQuery2.84E-06BRI1-KD interacting protein 118Nvv30005Brassinosteroids_signalingVV04s0008g05480
VIT_00s2188g00010ELMMQuery2.84E-06Tonoplast dicarboxylate transporterPM CY/PM ER ER/VM CYvv50124Porters_cat_30_to_64VV00s2188g00010
VIT_10s0003g02590ELMMQuery2.85E-06SH3 domain-containing protein 3 (SH3P3)CY/N N CY N/PMvv50110Protein_coatVV10s0003g02590
VIT_11s0078g00420ELMMQuery3.19E-06GalactokinaseCY Pvv10052Galactose_metabolismVV11s0078g00420
VIT_18s0076g00360ELMMQuery3.34E-06EMB1075 (embryo defective 1075) carboxy-lyaseCYNDVV18s0076g00360
VIT_18s0001g14360ELMMQuery3.34E-06Tubulin beta-1 chainN CYS/N CYvv44145Phagosome vv44810Regulation_of_actin_cytoskeletonVV18s0001g14360
VIT_01s0146g00070ELMMQuery3.36E-0611-beta-hydroxysteroid dehydrogenaseCY C CYS/N C/M CYS Nvv10140C21-Steroid_hormone_metabolismVV01s0146g00070
VIT_03s0063g01780ELMMQuery3.45E-06Extra-large G-protein (XLG1)NNDVV03s0063g01780
VIT_06s0004g00040ELMMQuery4.19E-06Pur alpha-1 (purin-rich alpha 1)CY CY/P PM ER/PM ER CNDVV06s0004g00040
VIT_09s0002g01650ELMMQuery4.67E-065'-nucleotidase surECvv10230Purine_metabolism vv10240Pyrimidine_metabolism vv10760Nicotinate_and_nicotinamide_metabolismVV09s0002g01650
VIT_11s0052g00350ELMMQuery4.86E-06Receptor kinase TRKeCNDVV11s0052g00350
VIT_06s0004g01910ELMMQuery4.89E-06ADP,ATP carrier proteinCvv50123Porters_cat_18_to_29VV06s0004g01910
VIT_15s0046g03520ELMMQuery5.26E-06PhosphomannomutaseCYvv10051Fructose_and_mannose_metabolismVV15s0046g03520
VIT_00s0187g00130ELMMQuery5.95E-06Tonoplast dicarboxylate transporterCY CY/P PM ER/PM ER CY/Nvv50124Porters_cat_30_to_64VV00s0187g00130
VIT_02s0025g00780ELMMQuery6.06E-06Cation/hydrogen exchanger (CHX18)Cvv50124Porters_cat_30_to_64VV02s0025g00780
VIT_06s0004g06380ELMMQuery6.28E-06UDP-glucose: anthocyanidin 5,3-O-glucosyltransferaseCYvv10942Anthocyanin_biosynthesisVV06s0004g06380
VIT_16s0098g00730ELMMQuery9.13E-06Ribosomal protein L9 (RPL90A/C) 60SCYvv23010RibosomeVV16s0098g00730
VIT_04s0023g01150ELMMQuery9.77E-06Unknown proteinCNDVV04s0023g01150
VIT_17s0000g07640ELMMQuery1.65E-05Mannose-1-phosphate guanyltransferaseCYvv10530Aminosugars_metabolismVV17s0000g07640
VIT_09s0002g03620ELMMQuery1.92E-05NADP-dependent malic enzymeCvv10620Pyruvate_metabolism vv10710Carbon_fixationVV09s0002g03620
VIT_08s0007g03110ELMMQuery5.87E-05Transposon protein, Mutator sub-classCYNDVV08s0007g03110

Begin exploring the network
 

Darker blue/higher peak represents greater expression specificity. Expression specificity index of 1 and 5 indicates the gene is well and specifically expressed with the corresponding experimental condition, respectively


Submit list of directly- and indirectly- associated genes to  for functional enrichment analysis:
Parameters: (Default) Method:Fisher's Exact Test;
(Direct) Significance threshold: FDR < 0.05; Ordered query: True

(Indirect) Significance threshold: FDR < 0.05; Ordered query: True

Retrieve co-expressed genes list   

 
Begin exploring the network
 

Expression specificity of query probeset


Exp_descExpression specificity index
Rep1_GSSkin_mid-veraison0.93
Rep2_GSSkin_mid-veraison0.87
Rep3_GSSkin_mid-veraison0.95
Rep1_PSSkin_mid-veraison0.82
Rep2_PSSkin_mid-veraison0.83
Rep3_PSSkin_mid-veraison0.9
Rep2_RSSkin_mid-veraison0.81
Rep1_PSHSkin_harvest0.81
Rep1_PVPulp_pre-veraison1.42
Rep2_PVPulp_pre-veraison1.44
Rep3_PVPulp_pre-veraison1.43
Rep1_GSPulp_mid-veraison1.12
Rep2_GSPulp_mid-veraison1.11
Rep3_GSPulp_mid-veraison1.12
Rep1_PSPulp_mid-veraison1.09
Rep2_PSPulp_mid-veraison1.13
Rep3_PSPulp_mid-veraison1.08
Rep1_RSPulp_mid-veraison1.03
Rep2_RSPulp_mid-veraison0.94
Rep3_RSPulp_mid-veraison1.02
Rep1_GSHPulp_harvest0.92
Rep2_GSHPulp_harvest0.85
Rep3_GSHPulp_harvest0.92
Rep1_PSHPulp_harvest1.01
Rep2_PSHPulp_harvest1.02
Rep3_PSHPulp_harvest0.86
Rep1_RSHPulp_harvest0.95
Rep2_RSHPulp_harvest0.92
Rep3_RSHPulp_harvest0.88
Rep1_PVSeed_pre-veraison1
Rep2_PVSeed_pre-veraison0.93
Rep3_PVSeed_pre-veraison0.89
Rep1_GSSeed_mid-veraison0.84
Rep2_GSSeed_mid-veraison0.83
Rep3_GSSeed_mid-veraison0.85
Rep1_PSSeed_mid-veraison0.82
Rep2_PSSeed_mid-veraison0.87
Rep3_PSSeed_mid-veraison0.89
Rep1_RSSeed_mid-veraison0.85
Rep2_RSSeed_mid-veraison0.85
Rep3_RSSeed_mid-veraison0.99
Rep1_GSHSeed_harvest1.2
Rep2_GSHSeed_harvest1.28
Rep3_GSHSeed_harvest1.32
Rep1_PSHSeed_harvest1.24
Rep2_PSHSeed_harvest1.14
Rep3_PSHSeed_harvest1.13
Rep1_RSHSeed_harvest1.21
Rep2_RSHSeed_harvest1.07
Rep3_RSHSeed_harvest1.2
Callus_28days_rep11.18
Callus_28days_rep21.08
Callus_28days_rep31.29
Callus_3days_rep11.05
Callus_3days_rep21.04
Callus_3days_rep31.15
Rootstock_28days_rep10.91
Rootstock_28days_rep21.32
Rootstock_3days_rep20.82
leaf attacked by P. ficus, 6 hours1.28
leaf ctrl 6 hours1.23
leaf attacked by P. ficus, 96 hours1.33
leaf ctrl 96 hours1.31
leaf attacked by P. ficus, 6 hours1.34
leaf ctrl 6 hours1.27
leaf attacked by P. ficus, 96 hours1.33
leaf ctrl 96 hours1.29
Stamen_rep11.21
Stamen_rep21.2
Stamen_rep31.22
BerryPericarp-FS_rep11.54
BerryPericarp-FS_rep21.49
BerryPericarp-FS_rep31.41
BerryPericarp-PFS_rep11.4
BerryPericarp-PFS_rep21.29
BerryPericarp-PFS_rep31.18
BerryPericarp-V_rep10.95
BerryPericarp-V_rep21.21
BerryPericarp-V_rep30.98
BerryPericarp-MR_rep10.93
BerryPericarp-MR_rep21
BerryPericarp-MR_rep30.94
BerryPericarp-R_rep11.05
BerryPericarp-R_rep30.88
Bud-B_rep11.24
Bud-B_rep21.22
Bud-B_rep31.22
Bud-AB_rep11.19
Bud-AB_rep21.01
Bud-AB_rep31.15
Bud-L_rep11.01
Bud-L_rep21.04
Bud-L_rep31.03
BerryFlesh-PFS_rep11.42
BerryFlesh-PFS_rep21.51
BerryFlesh-PFS_rep31.52
BerryFlesh-V_rep10.95
BerryFlesh-V_rep20.93
BerryFlesh-V_rep30.93
BerryFlesh-MR_rep10.91
BerryFlesh-MR_rep20.97
BerryFlesh-MR_rep30.95
BerryFlesh-PHWI_rep10.9
BerryFlesh-PHWI_rep20.89
BerryFlesh-PHWII_rep10.83
BerryFlesh-PHWII_rep30.95
Inflorescence-Y_rep11.16
Inflorescence-Y_rep21.33
Inflorescence-Y_rep31.17
Inflorescence-WD_rep11.28
Inflorescence-WD_rep21.24
Inflorescence-WD_rep31.32
Flower-FB_rep11.28
Flower-FB_rep21.29
Flower-FB_rep31.27
Flower-F_rep11.25
Flower-F_rep21.28
Flower-F_rep31.29
Root_rep10.93
Root_rep20.98
Root_rep30.94
Leaf-Y_rep10.96
Leaf-Y_rep21.1
Leaf-Y_rep31.05
Leaf-FS_rep20.82
Carpel_rep11.45
Carpel_rep21.43
Carpel_rep31.45
Petal_rep11.33
Petal_rep21.27
Petal_rep31.33
BerryPericarp-PHWII_rep31.03
BerryPericarp-PHWIII_rep30.81
Pollen_rep11
Pollen_rep20.96
Pollen_rep30.87
Rachis-FS_rep11.03
Rachis-FS_rep21.19
Rachis-FS_rep31.03
Rachis-PFS_rep10.99
Rachis-PFS_rep21.14
Rachis-PFS_rep31
Rachis-V_rep11.02
Rachis-V_rep21.01
Rachis-V_rep30.99
Seed-V_rep11.13
Seed-V_rep21.13
Seed-V_rep31.12
Seed-MR_rep10.95
Seed-MR_rep21.02
Seed-MR_rep31.01
Seed-FS_rep11.43
Seed-FS_rep21.28
Seed-FS_rep31.37
Seed-PFS_rep10.93
Seed-PFS_rep20.95
Seed-PFS_rep30.96
Seedling_rep11.31
Seedling_rep21.27
Seedling_rep31.3
BerrySkin-PFS_rep11.37
BerrySkin-PFS_rep21.45
BerrySkin-PFS_rep31.42
BerrySkin-PHWI_rep20.85
BerrySkin-PHWII_rep10.84
Stem-G_rep11.29
Stem-G_rep21.26
Stem-G_rep31.28
Tendril-Y_rep11.23
Tendril-Y_rep21.32
Tendril-Y_rep31.35
Tendril-WD_rep11.33
Tendril-WD_rep21.3
Tendril-WD_rep31.2
Tendril-FS_rep20.83
Tendril-FS_rep30.91
ctrl, untreated, rep 1, beginning of v+raison1.14
ctrl, untreated, rep 2, beginning of v+raison1.37
ctrl, untreated, rep 3, beginning of v+raison1.2
cluster thinned, rep 1, beginning of v+raison1.25
cluster thinned, rep 2, beginning of v+raison1.1
cluster thinned, rep 3, beginning of v+raison1.29
ctrl, untreated, rep 2, end of v+raison0.9
ctrl, untreated, rep 2, end of v+raison0.9
ctrl, untreated, rep 2, end of v+raison0.9
ctrl, untreated, rep 2, end of v+raison0.9
ctrl, untreated, rep 3, end of v+raison0.83
ctrl, untreated, rep 3, end of v+raison0.83
ctrl, untreated, rep 3, end of v+raison0.83
ctrl, untreated, rep 3, end of v+raison0.83
cluster thinned, rep 1, end of v+raison1.03
cluster thinned, rep 2, end of v+raison0.82
cluster thinned, rep 3, end of v+raison0.94
ctrl, untreated, rep 1, beginning of veraison1.4
ctrl, untreated, rep 2, beginning of veraison1.31
ctrl, untreated, rep 3, beginning of veraison1.32
pre-bloom defoliation, rep 1, beginning of veraison1.22
pre-bloom defoliation, rep 2, beginning of veraison1.36
pre-bloom defoliation, rep 3, beginning of veraison1.25
pre-bloom defoliation, rep 1, end of veraison1
pre-bloom defoliation, rep 2, end of veraison1.09
pre-bloom defoliation, rep 3, end of veraison1
veraison defoliation, rep 1, end of veraison0.87
veraison defoliation, rep 2, end of veraison1.01
veraison defoliation, rep 3, end of veraison0.99
pre-bloom defoliation, rep 3, harvest0.86

If you have questions, please contact Darren Wong (darren.wong@adelaide.edu.au))